南京林业大学学报(自然科学版) ›› 2008, Vol. 32 ›› Issue (05): 61-64.doi: 10.3969/j.jssn.1000-2006.2008.05.012

• 研究论文 • 上一篇    下一篇

杨树部分基因起始密码子AUG侧翼序列特征分析

单文娟1,周猛1,2,卫巍1,童春发1,施季森1*   

  1. 1. 南京林业大学, 国家林业局、江苏省林木遗传与基因工程重点实验室, 江苏 南京 210037; 2. 哈尔滨医科大学生物信息学系, 黑龙江 哈尔滨 150086
  • 出版日期:2008-10-18 发布日期:2008-10-18

Characteristic analysis of AUG context in poplar genes

SHAN Wen-juan1, ZHOU Meng1,2, WEI Wei1, TONG Chun-fa1, SHI Ji-sen1*   

  1. 1. Nanjiag Forestry University, The Key Laboratory. of Forest Genetics and Gene Engineering of the State Administration and Jiangsu Province, Nanjing 210037, China; 2. Department of Bioinformatics Harbin Medical University, Harbin 150086, China
  • Online:2008-10-18 Published:2008-10-18

摘要: <正>利用石蜡切片法和显微观察法对木犀属Osmanthus27种植物叶的微形态结构进行了比较研究。结果表明,叶脉厚度、叶片厚度、角质层厚度、栅栏组织层数和厚度、海绵组织厚度、栅栏组织和海绵组织厚度的比值以及中脉维管组织的结构特征等具有一定的种间差异。这些结构特征与木犀属植物生长环境表现出一定的适应性和相关性。

Abstract: Characteristics of AUG context (from-20to+6bp relative to the initiator AUG codon) were analyzed in 297genes of Poplar. The conservation and correlation of the initiator AUG context between high expressed genes and low expressed genes were compared. Results showed that there were strong preference for A at six positions (-1,-2,-3,-4,-5and-6) and G at+4position. The conservation of AUG context in high expressed genes was shown to be different from that of low expressed genes. The positions of-6,-3and+4were possibly related with the feature of high expression. The correlation in some special AUG context sections was possibly related with translation efficiency. The effect of the content of GC of AUG context on AUG CAI in low expressed genes was discussed. It was seen thai there was more effectiveness of higher GC content on translation initiation efficiency in low expressed genes. The analysis was done to know the characteristics of AUG context and the relationship of gene expression in Poplar.

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