JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2024, Vol. 48 ›› Issue (1): 18-28.doi: 10.12302/j.issn.1000-2006.202207018
Special Issue: 基因编辑与分子设计育种专题
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YANG Yunli(), CAO Li, WANG Yang, GU Chenrui, CHEN Kun, LIU Guifeng()
Received:
2022-07-10
Revised:
2022-08-31
Online:
2024-01-30
Published:
2024-01-24
Contact:
LIU Guifeng
E-mail:905191488@qq.com;liuguifeng@126.com
CLC Number:
YANG Yunli, CAO Li, WANG Yang, GU Chenrui, CHEN Kun, LIU Guifeng. Effects of BpGLK1 interference expression on leaf color and growth of Betula pendula ‘Dalecarlica’[J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 18-28.
Table 1
Sequences of qRT-PCR primers"
引物名称 primer name | 引物序列(5'-3') primer sequence(5'-3') |
---|---|
GLK_RNAi_Cis_F | CATGCCATGGGCACAGAAGGTTTGTGCAAG |
GLK_RNAi_Cis_R | TTGGCGCGCCCCATACATCTGCCTTCTCTGG |
GLK_RNAi_Anti_F | GCTCTAGAGCACAGAAGGTTTGTGCAAG |
GLK_RNAi_Anti_R | CGCGGATCCCCATACATCTGCCTTCTCTGG |
Bar-F | TTAGATCTCGGTGACGGGCA |
Bar-R | CGGTCTGCACCATCGTCAAC |
Table 2
Sequences of differential genes qRT-PCR primers"
引物名称 primer name | 引物序列(5'-3') primer sequence(5'-3') |
---|---|
BpCOL-F' | GTTGCTGAGCTATGCACGAC |
BpCOL-R' | CTACCTAAACAATCCGCATC |
BpLCHⅡ-F' | AGTGATATTCTCGATCTCATCTAACAC |
BpLCHⅡ-R' | AAGCAGCCATTGGTTTGAAAG |
BpPDS-F' | ATGAGTCTCTGCCTCGTCTC |
BpPDS-R' | CTGCGTCGGAAGCTTCGAGG |
BpFKBP-F' | ATGGCTTCCATCTTCGGCTC |
BpFKBP-R' | GCTGGAAGCTATCCAGTCTG |
Table 3
Quality assessment of RNA-seq sequencing"
样本株系 line sample | 总高质量序列数 clean reads number | 总碱基数 clean bases number | 高质量序列比/% clean reads rate | clean Q30 bases rate/% | 总序列数 total teads | 比对序列数 mapped reads | 比对序列占比/% mapping rate |
---|---|---|---|---|---|---|---|
WT-2 | 39 924 512 | 5 988 676 800 | 97.78 | 93.39 | 39 924 512 | 37 088 384 | 92.90 |
WT-3 | 42 201 930 | 6 330 289 500 | 97.18 | 93.50 | 42 201 930 | 39 028 012 | 92.48 |
RE1-2 | 39 945 148 | 5 991 772 200 | 97.47 | 93.48 | 39 945 148 | 36 893 214 | 92.36 |
RE1-3 | 40 224 716 | 6 033 707 400 | 97.32 | 93.68 | 40 224 716 | 37 287 119 | 92.70 |
RE2-1 | 39 919 844 | 5 987 976 600 | 97.40 | 93.44 | 39 919 844 | 36 833 970 | 92.27 |
RE2-2 | 39 735 726 | 5 960 358 900 | 97.36 | 93.44 | 39 735 726 | 36 608 938 | 92.13 |
RE3-1 | 40 146 146 | 6 021 921 900 | 97.77 | 93.56 | 40 146 146 | 36 960 182 | 92.06 |
RE3-2 | 43 059 882 | 6 458 982 300 | 97.75 | 93.67 | 43 059 882 | 39 603 300 | 91.97 |
Table 4
GO classification of differentially expressed genes in transgenic strains vs WT"
编号 No. | GO分类号 GO code | GO生物过程 biological process |
---|---|---|
1 | GO:0042742 | 细菌防御反应 defense response to bacterium |
2 | GO:0006952 | 防御反应 defense response |
3 | GO:0006950 | 对压力的反应 response to stress |
4 | GO:0006796 | 含磷化合物代谢过程 phosphate-containing compound metabolic process |
5 | GO:0006793 | 磷代谢过程 phosphorus metabolic process |
6 | GO:0044237 | 细胞代谢过程 cellular metabolic process |
7 | GO:0008152 | 代谢过程 metabolic process |
8 | GO:0009987 | 细胞过程 cellular process |
9 | GO:1901576 | 有机物生物合成过程 organic substance biosynthetic process |
10 | GO:0009058 | 生物合成过程 biosynthetic process |
11 | GO:0071704 | 有机物代谢过程 organic substance metabolic process |
12 | GO:0044238 | 初级代谢过程 primary metabolic process |
13 | GO:0043170 | 大分子代谢过程 macromolecule metabolic process |
Table 5
Comparison of four significantly down-regulated differential genes in transgenic strains relative to WT strains"
基因 gene | 编号 code | 比对基因 compared gene |
---|---|---|
BpCOL | Bpev01.c0088.g0068 | 栓皮栎(Quercus suber)锌指蛋白(zinc finger protein) CONSTANS-LIKE 16-like (LOC112018537) |
BpPDS | Bpev01.c0172.g0006 | 英国胡桃(Juglans regia (English walnut))15顺式植物烯脱饱和酶,叶绿体/色塑性(15-cis-phytoene desaturase, chloroplastic/chromoplastic)(LOC109007079) |
BpLCHⅡ | Bpev01.c0362.g0012 | 白栎(Quercus lobata)LHCII 1型叶绿素a-b结合蛋白(chlorophyll a-b binding protein of LHCII type 1)(LOC115955462) |
BpFKBP | Bpev01.c1427.g0002 | 英国胡桃(Juglans regia (English walnut))肽基脯氨酰顺反异构酶FKBP17-2(peptidyl-prolyl cis-trans isomerase FKBP17-2),chloroplastic-like (LOC108982577) |
Bpev01.c1427.g0004 | 野生黑核桃×英国胡桃(Juglans microcarpa×J. sregia)肽基脯氨酰顺反异构酶FKBP17-2,叶绿体(peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic)(LOC121243416) |
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