Characterization of DELLA protein family members in Populus alba × Populus glandulosa and their functional analysis in wood formation

Linxi Yang, Quanzi Li, Yingli Liu

Journal of Nanjing Forestry University (Natural Sciences Edition) ›› 0

PDF(2775 KB)
PDF(2775 KB)
Journal of Nanjing Forestry University (Natural Sciences Edition) ›› 0 DOI: 10.12302/j.issn.1000-2006.202604016

Characterization of DELLA protein family members in Populus alba × Populus glandulosa and their functional analysis in wood formation

  • Linxi Yang1, Quanzi Li2, Yingli Liu1,*
Author information +
History +

Abstract

【Objective】The present study focuses on the systematic identification of DELLA protein family members in Populus alba × Populus glandulosa, with the purpose of exploring their roles in wood formation and clarifying the molecular pathways through which these proteins regulate secondary growth.【Method】To identify DELLA family genes across the whole genome of Populus alba × P. glandulosa, we employed HMM and Blastp tools in combination with conserved domain analysis. Phylogenetic analysis and sequence alignment were carried out to determine the classification and nomenclature of these DELLA family members. Based on the tissue-specific expression patterns of DELLA genes, key members were selected for further study. Subsequently, RNA interference (RNAi) transgenic plants targeting PagRGA and PagRGL were constructed, using either the CaMV-35S promoter or the xylem-specific PtrGT8D1 promoter for gene expression regulation. The effects of DELLA gene silencing on plant growth, cambial activity, secondary cell wall thickening, and wood composition were investigated using phenotypic observation, vibratome sectioning, scanning electron microscopy, cell wall composition analysis, and transcriptome profiling.【Result】(1) A total of nine DELLA members were identified in P. alba × P. glandulosa, which were classified into four groups: PagRGA1, PagRGA2, PagRGL1, and PagRGL2. All members contained the conserved DELLA and GRAS domains. (2) RNAi silencing of PagRGA1/2 and PagRGL1/2 significantly decreased cambial cell layers by 1-3, reduced xylem width, lowered lignin content, and RT-qPCR verification confirmed downregulated expression of lignin biosynthetic enzyme related genes. Among them, the phenotypic differences of PagRGA RNAi plants are more significant. (3) Transcriptome analysis revealed that differentially expressed genes were enriched in meristem- and cell division-related GO terms following DELLA genesilencing. Auxin-related pathways were predominantly enriched in plants driven by the CaMV-35S promoter.【Conclusion】DELLA proteins represent a critical signaling module regulating secondary growth in P. alba × P. glandulosa, and functional redundancy exists among different members. DELLA proteins coordinately regulate cambial cell division and secondary cell wall deposition by modulating the expression of relevant genes and integrating multiple hormone signals.

Key words

P. alba × P. glandulosa / gibberellin / DELLA protein / cambium / secondary cell wall

Cite this article

Download Citations
Linxi Yang, Quanzi Li, Yingli Liu. Characterization of DELLA protein family members in Populus alba × Populus glandulosa and their functional analysis in wood formation[J]. Journal of Nanjing Forestry University (Natural Sciences Edition). 0 https://doi.org/10.12302/j.issn.1000-2006.202604016

References

[1] LUO L, LI L.Molecular understanding of wood formation in trees[J]. Forest Research, 2022, 2: 5. DOI: 10.48130/FR-2022-0005.
[2] WEI M, HSIEH J A, DANG J F, et al.Integrating scRNA-seq and snRNA-seq with spatial transcriptomics to unlock the xylem puzzle[J]. Genome Biology, 2026, 27(1): 109. DOI: 10.1186/s13059-026-04007-z.
[3] YE Z H, ZHONG R.Molecular control of wood formation in trees[J]. Journal of Experimental Botany, 2015, 66(14): 4119-4131. DOI: 10.1093/jxb/erv081.
[4] ERIKSSON M E, ISRAELSSON M, OLSSON O, et al.Increased gibberellin biosynthesis in transgenic trees promotes growth, biomass production and xylem fiber length[J]. Nature Biotechnology, 2000, 18(7): 784-788. DOI: 10.1038/77355.
[5] MAURIAT M, MORITZ T.Analyses of GA20ox-and GID1-over-expressing aspen suggest that gibberellins play two distinct roles in wood formation[J]. The Plant Journal, 2009, 58(6): 989-1003. DOI: 10.1111/j.1365-313X.2009.03836.x.
[6] PENG J, CAROL P, RICHARDS D E, et al.The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses[J]. Genes & Development, 1997, 11(23): 3194-3205. DOI: 10.1101/gad.11.23.3194.
[7] BRIONES-MORENO A, HERNÁNDEZ-GARCÍA J, VARGAS-CHÁVEZ C, et al. DELLA functions evolved by rewiring of associated transcriptional networks[J]. Nature Plants, 2023, 9(4): 535-543. DOI: 10.1038/s41477-023-01372-6.
[8] SUN T P.Gibberellin-GID1-DELLA: a pivotal regulatory module for plant growth and development[J]. Plant Physiology, 2010, 154(2): 567-570. DOI: 10.1104/pp.110.161554.
[9] FELIPO-BENAVENT A, ÚRBEZ C, BLANCO-TOURIÑÁN N, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction[J]. Development, 2018, 145(23): dev164962. DOI: 10.1242/dev.164962.
[10] HUANG D, WANG S, ZHANG B, et al.A gibberellin-mediated DELLA-NAC signaling cascade regulates cellulose synthesis in rice[J]. The Plant Cell, 2015, 27(6): 1681-1696. DOI: 10.1105/tpc.15.00015.
[11] YE Y, LIU B, ZHAO M, et al.CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice[J]. Plant Molecular Biology, 2015, 89(4-5): 385-401. DOI: 10.1007/s11103-015-0376-0.
[12] WANG Y, YU W, RAN L, et al.DELLA-NAC interactions mediate GA signaling to promote secondary cell wall formation in cotton stem[J]. Frontiers in Plant Science, 2021, 12: 655127. DOI: 10.3389/fpls.2021.655127.
[13] HU J, SU H, CAO H, et al.AUXIN RESPONSE FACTOR7 integrates gibberellin and auxin signaling via interactions between DELLA and AUX/IAA proteins to regulate cambial activity in poplar[J]. The Plant Cell, 2022, 34(7): 2688-2707. DOI: 10.1093/plcell/koac107.
[14] BASSEL G W, MULLEN R T, BEWLEY J D.Procera is a putative DELLA mutant in tomato (Solanum lycopersicum): effects on the seed and vegetative plant[J]. Journal of Experimental Botany, 2008, 59(3): 585-593. DOI: 10.1093/jxb/erm354.
[15] BUSOV V, MEILAN R, PEARCE D W, et al.Transgenic modification of gai or rgl1 causes dwarfing and alters gibberellins, root growth, and metabolite profiles in Populus[J]. Planta, 2006, 224(2): 288-299. DOI: 10.1007/s00425-005-0213-9.
[16] SUN T P.Gibberellin metabolism, perception and signaling pathways in Arabidopsis[J]. The Arabidopsis Book, 2008, 6: e0103. DOI: 10.1199/tab.0103.
[17] SUNDELL D, STREET N R, KUMAR M, et al.AspWood: high-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in Populus tremula[J]. The Plant Cell, 2017, 29(7): 1585-1604. DOI: 10.1105/tpc.17.00153.
[18] WEI M, LI H, WANG Q, et al.Genome-wide identification and expression profiling of B3 transcription factor genes in Populus alba × Populus glandulosa[J]. Frontiers in Plant Science, 2023, 14: 1193065. DOI: 10.3389/fpls.2023.1193065.
[19] DAI X, ZHAI R, LIN J, et al.Cell-type-specific PtrWOX4a and PtrVCS2 form a regulatory nexus with a histone modification system for stem cambium development in Populus trichocarpa[J]. Nature Plants, 2023, 9(1): 96-111. DOI: 10.1038/s41477-022-01315-7.
[20] YANG L, TONG B, WEI M, et al.GA20ox orchestrates distinct roles in cambium and xylem development via gibberellin and auxin signaling in poplar[J]. Industrial Crops and Products, 2026, 242: 123004. DOI:10.1016/j.indcrop.2026.123004.
[21] SILVERSTONE A L, CIAMPAGLIO C N, et al.The Arabidopsis RGA gene encodes a transcriptional regulator repressing the gibberellin signal transduction pathway[J]. The Plant Cell, 1998, 10(2): 155-169. DOI: 10.1105/tpc.10.2.155.
[22] BEN-TARGEM M, RIPPER D, BAYER M, et al.Auxin and gibberellin signaling cross-talk promotes hypocotyl xylem expansion and cambium homeostasis[J]. Journal of Experimental Botany, 2021, 72(10): 3647-3660. DOI: 10.1093/jxb/erab089.
[23] YOSHIDA H, HIRANO K, SATO T, et al.DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins[J]. Proceedings of the National Academy of Sciences, 2014, 111(21), 7861-7866. DOI: 10.1073/pnas.1321669111.
[24] SUZUKI H, PARK S H, OKUBO K, et al.Differential expression and affinities of Arabidopsis gibberellin receptors can explain variation in phenotypes of different DELLA mutants[J]. Plant and Cell Physiology, 2009, 50(8), 1521-1531. DOI: 10.1111/j.1365-313X.2009.03936.x.
[25] DAVIÈRE J M, ACHARD P. Gibberellin signaling in plants[J]. Development, 2013, 140(6): 1147-1151. DOI: 10.1242/dev.087650.
[26] SUN T P.The molecular mechanism and evolution of the GA-GID1-DELLA signaling module in plants[J]. Current Biology, 2011, 21(9): R338-345. DOI: 10.1016/j.cub.2011.02.036.
[27] ZHANG Y, WANG L, WU Y, et al.Gibberellin promotes cambium reestablishment during secondary vascular tissue regeneration after girdling in an auxin-dependent manner in Populus[J]. Journal of Integrative Plant Biology, 2024, 66(1): 86-102. DOI: 10.1111/jipb.13591.
[28] DAVIÈRE J M, WILD M, REGNAULT T, et al. Class Ⅰ TCP-DELLA interactions in inflorescence shoot apex determine plant height[J]. Current Biology, 2014, 24(16): 1923-1928. DOI: 10.1016/j.cub.2014.07.012.
[29] RESENTINI F, FELIPO-BENAVENT A, COLOMBO L, et al.TCP14 and TCP15 mediate the promotion of seed germination by gibberellins in Arabidopsis thaliana[J]. Molecular Plant, 2015, 8(3): 482-485. DOI: 10.1016/j.molp.2014.11.018.
[30] ALABADÍ D, SUN T P.Green revolution DELLA proteins: functional analysis and regulatory mechanisms[J]. Annual Review of Plant Biology, 2025, 76(1): 373-400. DOI: 10.1146/annurev-arplant-053124-050732.
[31] LANTZOUNI O, ALKOFER A, FALTER-BRAUN P, et al.GROWTH-REGULATING FACTORS interact with DELLAs and regulate growth in cold stress[J]. The Plant Cell, 2020, 32(4): 1018-1034. DOI: 10.1105/tpc.19.00784.
[32] JEON H W, CHO J S, PARK E J, et al.Developing xylem-preferential expression of PdGA20ox1, a gibberellin 20-oxidase 1 from Pinus densiflora, improves woody biomass production in a hybrid poplar[J]. Plant Biotechnology Journal, 2016, 14(4): 1161-1170. DOI: 10.1111/pbi.12484.
PDF(2775 KB)

Accesses

Citation

Detail

Sections
Recommended
The full text is translated into English by AI, aiming to facilitate reading and comprehension. The core content is subject to the explanation in Chinese.

/