JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2017, Vol. 60 ›› Issue (02): 55-62.doi: 10.3969/j.issn.1000-2006.2017.02.009
Previous Articles Next Articles
FENG Kai, HOU Jing, DAI Xiaogang, LI Shuxian*
Online:
2017-04-18
Published:
2017-04-18
CLC Number:
FENG Kai, HOU Jing, DAI Xiaogang, LI Shuxian. Analyzing the SPL gene family in Salix suchowensis[J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2017, 60(02): 55-62.
[1] 徐妙云, 王磊. MicroRNA与植物花发育调控的研究进展[J]. 中国农业科技导报, 2011, 13(2): 9-16. DOI:10.3969/j.issn.1008-0864.2011.02.02 XU M Y, WANG L. Research progress on microRNAs role in controlling flower development[J]. Journal of Agricultural Science and Technology, 2011, 13(2): 9-16. [2] PARK M Y, WU G, GONZALEZ-SULSER A, et al. Nuclear processing and export of microRNAs in Arabidopsis[J]. Proceedings of the National Academy of Sciences, 2005, 102(10): 3691-3696. DOI:10.1073/pnas.0405570102. [3] FRANCO-ZORRILLA J M, VALLI A, TODESCO M, et al. Target mimicry provides a new mechanism for regulation of microRNA activity[J]. Nature Genetics, 2007, 39(8): 1033-1037. DOI:10.1038/ng2079. [4] HUIJSER P, SCHMID M. The control of developmental phase transitions in plants[J]. Development, 2011, 138(19): 4117-4129. DOI:10.1242/dev.063511. [5] YAMAGUCHI A, ABE M. Regulation of reproductive development by non-coding RNA in Arabidopsis: to flower or not to flower[J]. Journal of Plant Research, 2012, 125(6): 693-704. DOI:10.1007/s10265-012-0513-7. [6] 黄赫, 徐启江. MicroRNA调控被子植物花发育的研究进展[J]. 植物生理学报, 2012, 48(10): 929-940. HUANG H, XU Q J.Progress in research of MicroRNA regulation on angiosperm flower development[J]. Plant Physiology Journal, 2012, 48(10): 929-940. [7] SPANUDAKIS E, JACKSON S. The role of microRNAs in the control of flowering time[J]. Journal of Experimental Botany, 2014, 65(2):365-380. DOI:10.1093/jxb/ert453. [8] YAMASAKI K, KIGAWA T, INOUE M,et al. A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SPL-family transcription factors[J]. Journal of Molecular Biology, 2004, 337(1): 49-63. DOI:10.1016/j.jmb.2004.01.015. [9] 代法国, 胡宗利, 陈国平, 等. 植物特有的SPL-box基因家族的研究进展[J]. 生命科学, 2010, 22(2): 155-160. DAI F G, HU Z L, CHEN G P,et al. Progress in the plant specific SBP-box gene family[J]. Chinese Bulletin of Life Sciences, 2010, 22(2): 155-160. [10] RHOADES M, REINHART B, LIM L,et al. Prediction of plant microRNA targets[J]. Cell, 2002, 110(4): 513-520. DOI:10.1016/S0092-8674(02)00863-2. [11] 王沙沙. 小黑杨FT-like基因的克隆、原核表达及植物超表达、RNAi表达载体的构建[D]. 哈尔滨: 东北林业大学, 2011. WANG S S. Cloning, prokaryotic expression and transformation of plant overexpression and RNAi vector of FT-like gene of Populus xiaohei[D]. Harbin: Northeast Forestry University, 2011. [12] FINN R D, CLEMENTS J, EDDY S R. HMMER web server: interactive sequence similarity searching[J]. Nucleic Acids Research, 2011, 39(8):29-37. DOI:10.1093/nar/gkr367. [13] UNTE U, SORENSEN A, PESARESI P,et al. SPL8, an SPL-box gene that affects pollen sac development in Arabidopsis[J]. The Plant Cell, 2003, 15(4): 1009-1019. DOI:10.1105/tpc.010678. [14] ALTSCHUL S, MADDEN L, SCHAFFER A,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs[J]. Nucleic Acids Reserch, 1997, 25(17): 3389-3402. DOI:10.1093/nar/25.17.3389. [15] BLANC G, WOLFE K. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes[J]. The Plant Cell, 2004, 16(7): 1667-1678. DOI:10.1105/tpc.021345. [16] EDGAR R C. MUSCLE: multiple sequence alignment with high accuracy and high throughput[J]. Nucleic Acids Research, 2004, 32(5):1792-1797. DOI:10.1093/nar/gkh340. [17] YANG Z, NIELSEN R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models[J]. Molecular Biology and Evolution, 2000, 17(1): 32-43. [18] KATOH K, KUMA K, MIYATA T,et al. Improvement in the accuracy of multiple sequence alignment program MAFFT[J]. Genome Informatics Series, 2005, 16(1): 22-33. [19] KATOH K, TOH H. Recent developments in the MAFFT multiple sequence alignment program[J]. Briefings in Bioinformatics, 2008, 9(4): 286-298. DOI:10.1093/bib/bbn013. [20] TAMURA K, PETERSON D, PETERSON N,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods[J]. Molecular Biology and Evolution, 2011, 28(10): 2731-2739. DOI:10.1093/molbev/msr121. [21] LEE T, TANG H, WANG X,et al. PGDD: a database of gene and genome duplication in plants[J]. Nucleic Acids Research, 2013, 41(D1): 1152-1158. DOI:10.1093/nar/gks1104. [22] WANG Y, TANG H, DEBARRY J D, et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity[J]. Nucleic Acids Research, 2012, 40(7): e49. DOI:10.1093/nar/gkr1293. [23] LIU J, YIN T, YE N, et al. Transcriptome analysis of the differentially expressed genes in the male and female shrub willows (Salix suchowensis)[J]. Plos One, 2013, 8(4): e60181. DOI:10.1371/journal.pone.0060181. [24] CHEN Y, MAO Y, LIU H, et al. Transcriptome analysis of differentially expressed genes relevant to variegation in peach flowers[J]. PloS One, 2014, 9(3): e90842. DOI:10.1371/journal.pone.0090842. [25] ROMUALDI C, BORTOLUZZI S, D’ALESSI F, et al. IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments[J]. Physiological Genomics, 2003, 12(2): 159-162. DOI:10.1152/physiolgenomics.00096.2002 [26] YANG Z, BIELAWSKI J. Statistical methods for detecting molecular adaptation[J]. Trends in Ecology and Evolution, 2000, 15(12): 496-503. DOI:10.1016/S0169-5347(00)01994-7. [27] BLANC G, HOKAMP K, WOLFE K. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome[J]. Genome Research, 2003, 13(2): 137-144. DOI:10.1101/gr.751803. [28] TANG H, WANG X, BOWERS J E, et al. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps[J]. Genome Research, 2008, 18(12):1944-1954. DOI:10.1101/gr.080978.108. [29] TANG H, BOWERS J E, WANG X, et al. Synteny and collinearity in plant genomes[J]. Science, 2008, 320(5875):486-8. DOI:10.1126/science.1153917. [30] DAI X, HU Q, CAI Q, et al. The willow genome and divergent evolution from poplar after the common genome duplication[J]. Cell Research, 2014, 24(10):1274-1277. DOI:10.1038/cr.2014.83. [31] INITIATIVE A G. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana[J]. Nature, 2000, 408(6814):796-815. DOI:10.1038/35048692. [32] JAILLON O, AURY J M, NOEL B, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla[J]. Nature, 2007, 449(7161):463-467. DOI:10.1038/nature06148. [33] MING R, HOU S, FENG Y, et al. The draft genome of the transgenic tropical fruit tree papaya(Carica papaya Linnaeus)[J]. Nature, 2008, 452(7190):991-996. DOI:10.1038/nature06856. [34] GUO L, CHEN Y, YE N, et al. Differential retention and expansion of the ancestral genes associated with the paleopolyploidies in modern rosid plants, as revealed by analysis of the extensins super-gene family[J]. BMC Genomics, 2014, 15(1): 612. DOI:10.1186/1471-2164-15-612. |
[1] | BU Xiaoting, FU Wei, LI Shuxian, XU Zhibiao, PENG Daqing, XU Linqiao. Effects of rejuvenation and hormone treatment on the rooting of softwood cuttings of Quercus texana and anatomical observations of rooting [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 129-136. |
[2] | DU Jincheng, LI Xinxin, WANG Zeliang, LIU Si, ZHONG Yi, WANG Lihua. Response of physiological indexes of three Olea europaea cultivars to PEG stress [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 137-143. |
[3] | FANG Jing, ZHANG Shuman, YAN Shanchun, WU Shuai, ZHAO Jiaqi, MENG Zhaojun. Effects of the compound inoculation of two arbuscular mycorrhizal(AM) fungi on the resistance of Populus pseudo-cathayana × P. deltoides leaves to Hyphantria cunea [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 144-154. |
[4] | ZHANG Xinfang, WANG Guangpeng, ZHANG Shuhang, LI Ying, GUO Yan. Screening and analysis of differential secondary metabolites in Castanea mollissima with different levels of resistance to Oligonychus ununguis [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 234-240. |
[5] | YANG Hong, YI Xiangui, WANG Xianrong, WU Tong, ZHOU Huajin, CHEN Jie, LI Meng, ZHU Zhaoqing. Prunus discoidea‘Yuanchun’:a new cultivar of cherry blossom [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 275-276. |
[6] | TIAN Mengyang, ZHU Shulin, DOU Quanqin, JI Yanhong. The effects of intercropping of Carya illinoinensis and Camellia sinensis ‘Anjibaicha’ on photosynthetic characteristics of C. sinensis tree during rapid growth period [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(2): 86-96. |
[7] | ZHANG Wenxu, LIN Xiaoyue, MAO Lingfeng, YI Lixiao, LI Yao, YING Jianping, TANG Chaohe. Activity rhythm and clustering behavior of Reeve’s muntjac (Muntiacus reevesi) in Lüconghu Provincial Wetland Park of Zhejiang Province [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 81-87. |
[8] | DONG Yujie, MAO Lingfeng, ZHANG Min, LU Xudong, WU Xiuping. Relationship between aboveground biomass and environmental factors of subtropical typical evergreen broad-leaved forest in east China [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 74-80. |
[9] | LU Xudong, DONG Yuran, LI Yao, MAO Lingfeng. Community assembly mechanism for different planting ages of Chinese fir artificial forests in subtropical China [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 67-73. |
[10] | XING Bingbing, LI Yao, MAO Lingfeng. Taxonomic and geographic differentiation of phylogenetic conservatism of plant functional traits: a case study of maximum plant height of Chinese angiosperms [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 59-66. |
[11] | FAN Mingyang, HU Meng, YNAG Yuan, FANG Yanming. Community classification, structures and species diversity characteristics of Pinus massoniana and P. hwangshanensis in the eastern China [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 47-58. |
[12] | ZHAO Ya’nan, SUN Tianhua, WANG Lifeng, XU Qiang, LIU Junxia, GAO Baojia, ZHOU Guona. Plant hormones and metabolites response to feeding stimulation by pine caterpillar (Dendrolimus tabulaeformis) and leaf clipping control in Chinese pine (Pinus tabuliformis) [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 219-226. |
[13] | LI Qiujie, LI Xiangcheng. Pointwise detection of street tree crown point clouds based on mobile laser scanning [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 205-213. |
[14] | SA Rula, WANG Zirui, HUA Yongchun, HU Richa, LIU Lei, GAO Minglong, YU Xiaoyu. Evaluating forest ecosystem restoration ability of natural forest in northern Greater Khingan Mountains by a structural equation model [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 196-204. |
[15] | PENG Zhongtao, GUO Jiaxing, WANG Yixuan, WANG Lei, JIN Guangze, LIU Zhili. Variation and correlation analysis of leaf traits of three Acer species in different growth periods in the Xiaoxing’an Mountains of northeast China [J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2024, 48(1): 131-139. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||