Bioinformatics and expression characteristics analysis of BpTCP8 in Betula platyphylla Suk.

AN Linjun, LUAN Jiayu, REN Li, LI Huiyu, XIA De’an

JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2019, Vol. 43 ›› Issue (5) : 67-73.

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JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2019, Vol. 43 ›› Issue (5) : 67-73. DOI: 10.3969/j.issn.1000-2006.201811066

Bioinformatics and expression characteristics analysis of BpTCP8 in Betula platyphylla Suk.

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Abstract

【Objective】 To reveal the function of BpTCP8 in the growth and development ofBetula platyphylla Suk., we analyzed the sequence characteristics, expression pattern in different tissues and the BpTCP8 gene response to hormones and stress.【Method】 The sequence characteristics of BpTCP8 gene were analyzed using bioinformatic methods. Besides, the expression characteristics of the BpTCP8 gene in different tissues as well as its response to hormones and stress were analyzed by real-time fluorescent quantitative PCR.【Result】 Using bioinformatic tools, it was found that the predicted amino acid sequence for the BpTCP8 gene contained a highly conserved bHLH domain, similar to that of the TCP family of transcriptional regulators. Results from qRT-PCR analyses indicated that BpTCP8 was highly expressed during the early developmental stages and during leaf senescence; BpTCP8 was also found to be upregulated in leaves with deep-splitting, apical buds, the xylem and the phloem. Different expression patterns of BpTCP8 were exhibited under different hormone treatments (GA3, ME-JA and ABA) and abiotic stresses (high PEG, NaCl, CdCl2 and NaHCO3concentrations).【Conclusion】 Therefore, the BpTCP8 gene may be involved in leaf maturation and leaf shape, and in the growth of apical buds, the xylem, and the phloem of B. platyphylla Suk.. The gene is positively regulated by GA3 and JA. BpTCP8 expression may also affect plant resistance to drought, salt, alkali and heavy metals through the ABA signaling pathway.

Key words

Betula platyphylla Suk. / BpTCP8 gene / expression characteristics / hormone response / stress response

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AN Linjun , LUAN Jiayu , REN Li , et al . Bioinformatics and expression characteristics analysis of BpTCP8 in Betula platyphylla Suk.[J]. JOURNAL OF NANJING FORESTRY UNIVERSITY. 2019, 43(5): 67-73 https://doi.org/10.3969/j.issn.1000-2006.201811066

References

[1]
MART’IN-TRILLO M, CUBAS P. TCP genes: a family snapshot ten years later[J]. Trends Plant Sci, 2010, 15:31-39. DOI: 10.1016/j.tplants.2009.11.003.
[2]
CUBAS P, LAUTER N, DOEBLEY J, et al. The TCP domain: a motif found in proteins regulating plant growth and development[J]. Plant J, 1999, 18(2), 215-222. DOI: 10.1046/j.1365-313X.1999.00444.x.
[3]
刘丽娟, 高辉. TCP家族基因研究进展[J]. 生物技术通报, 2016, 32(9):14-22. DOI: 10.13560/j.cnki.biotech.bull.1985.2016.09.003.
LIU L J, GAO H. Research progress on the family of TCP genes [J]. Biotechnology Bulletin, 2016, 32(9):14-22.
[4]
DOEBLEY J, STEC A, HUBBARD L. The evolution of apical dominance in maize[J]. Nature, 1997, 386:485-488. DOI: 10.1038/386485a0.
[5]
NAG A, KING S, JACK T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis[J]. Proc Natl Acad Sci, 2009, 106(52):22534-22539. DOI: 10.1073/pnas.0908718106.
[6]
PALATNIK J F, ALLEN E, WU X, et al. Control of leaf morphogenesis by microRNAs[J]. Nature, 2003, 425(6955):257. DOI: 10.1038/nature01958.
[7]
CRAWFORD B C, NATH U, CARPENTER R, et al. CINCINNATA controls both cell differentiation and growth in petal lobes and leaves of Antirrhinum[J]. Plant Physiology, 2004, 135(1):244-253. DOI: 10.1104/pp.103.036368.
[8]
SCHOMMER C, PALATNIK J F, AGGARWAL P, et al. Control of jasmonate biosynjournal and senescence by miR319 targets[J]. Plos Biology, 2008, 6(9):e230. DOI 10.1371/journal.pbio.0060230.
[9]
SARVEPALLI K, NATH U. Hyper-activation of the TCP4 transcription factor in Arabidopsis thaliana accelerates multiple aspects of plant maturation[J]. Plant Journal for Cell & Molecular Biology, 2011, 67(4):595-607. DOI: 10.1111/j.1365-313X.2011.04616.x.
[10]
YANAI O, SHANI E, RUSS D, et al. Gibberellin partly mediates LANCEOLATE activity in tomato[J]. The Plant Journal, 2011, 68(4):12. DOI: 10.1111/j.1365-313X.2011.04716.x.
[11]
KOROLEVA O A, TOMLINSON M L, LEADER D, et al. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions[J]. Plant Journal for Cell & Molecular Biology, 2010, 41(1):162-174. DOI: 10.1111/j.1365-313X.2004.02281.x.
[12]
董京祥, 任丽, 张园, 等. 白桦BpTCPs基因家族生物信息学及时空表达分析[J]. 南京林业大学报(自然科学版), 2018, 42(4):113-118. DOI: 10.3969/j.issn.1000-2006.201709001.
DONG J X, REN L, ZHANG Y, et al. Analysis of temporal and spatial expression of BpTCPs gene family bioinformatics in Betula platyphylla [J]. Journal of Nanjing Forestry University(Natural Sciences Edition), 2018, 42(4):113-118.
[13]
冯雅岚, 熊瑛, 张均, 等. TCP转录因子在植物发育和生物胁迫响应中的作用[J]. 植物生理学报, 2018(5):709-717. DOI: 10.13592/j.cnki.ppj.2017.0572.
FENG Y L, XIONG Y, ZHANG J, et al. Role of TCP transcription factors in plant development and biotic stress responses[J]. Plant Physiology Journal, 2018(5):709-717.
[14]
SUN X, CHONGDE W, NAN X, et al. Activation of secondary cell wall biosynjournal by miR319-targeted TCP4 transcription factor[J]. Plant Biotechnology Journal, 2017, 15(10):1284. DOI: 10.1111/pbi.12715.
[15]
DANISMAN S, VAND W F, DHONDT S, et al. Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically[J]. Plant Physiology, 2012, 159(4):1511-1523. DOI: 10.1104/pp.112.200303.
[16]
EFRONY I, HAN S, KIM H J, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses[J]. Developmental Cell, 2013, 24(4):438-445. DOI: 10.1016/j.devcel.2013.01.019.
[17]
MA X, MA J, FAN D, et al. Genome-wide identification of TCP family transcription factors from Populus euphratica and their involvement in leaf shape regulation[J]. Scientific Reports, 2016, 6:32795. DOI: 10.1038/srep32795.
[18]
SCHOMMER C, PALATNIK J F, AGGARWAL P, et al. Control of jasmonate biosynjournal and senescence by miR319 targets[J]. PLoS Biol, 2008, 6(9):e230. DOI: 10.1371/journal.pbio.0060230.
[19]
MAKHOPADHYAY P, TYAGI A K, TYAGI A K. OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways[J]. Scientific Reports, 2015, 5:9998. DOI: 10.1038/srep09998.
[20]
刘春浩, 梁楠松, 于磊, 等. 水曲柳TCP4转录因子克隆及胁迫和激素下的表达分析[J]. 北京林业大学学报, 2017, 39(6):22-31. DOI: 10.13332/j.1000-1522.20160359.
LIU C H, LIANG N S, YU L, et al. Cloning, analysing and homologous expression of TCP4 transcription factor under abiotic stress and hormone signal in Fraxinus mandschurica [J]. Journal of Beijing Forestry University, 2017, 39(6) 22-31.

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