Advance on miR160/miR167/miR390 family and its target genes in plants

doi:10.3969/j.issn.1000-2006.2014.03.030

JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2014, Vol. 38 ›› Issue (03): 155-159.doi: 10.3969/j.issn.1000-2006.2014.03.030

Previous Articles Next Articles

Advance on miR160/miR167/miR390 family and its target genes in plants

YANG Chunxia^1,2, XU Meng¹, WANG Mingxiu¹, HUANG Minren^1*

1.College of Forest Resource and Environment,Nanjing Forestry University,Nanjing 210037,China;
2.Jiangxi Academy of Forestry, Nanchang 330013, China

Online:2014-05-15 Published:2014-05-15

Abstract

Abstract: MicroRNA(miRNA)is endogenous and non-coding small RNA with 21-23 nucleotides, and it widely exits in eukaryotes. MiRNAs repress gene expression at post transcriptional level by acting on near-perfect complementary sequences in mRNA coding region to guide cleavage and translational repression, and it plays an important role in regulating cell cycle and development timing of biology. Three miRNA families including miR160, miR167 and miR390 all targeting to ARF(Auxin response factor)gene family have been reviewed, and which indicates that they fulfil the similar and differential function. For example, miR160/miR167/miR390 plays an important role in plant development. But miR160 focuses on regulating embryo and root development, miR167 focuses on the regulation of flowers and fruit development, and miR390 has remarkable effect on regulating plant lateral organ development. Moreover, feedback regulation exists between miR160/miR167/miR390 and their target genes.

CLC Number:

Q522

YANG Chunxia, XU Meng, WANG Mingxiu, HUANG Minren. Advance on miR160/miR167/miR390 family and its target genes in plants[J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2014, 38(03): 155-159.

References

[1] Chen X. Small RNAs and their roles in plant development [J]. Annu Rev Cell Dev Biol, 2009, 25: 21-44.
[2] Baulcombe D. RNA silencing in plants [J]. Nature, 2004, 431: 356-363.
[3] Chen X M. microRNA biogenesis and function in plants [J]. FEBS Letters, 2005, 579: 5923-5931.
[4] Zhang L, Hou D X, Chen X, et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA [J]. Cell Research, 2012, 22(1):107-126.
[5] Millar A A, Waterhouse P M. Plant and animal microRNAs: similarities and differences [J]. Funct Integr Genomics, 2005, 5(3): 129-135.
[6] Rajewsky N. MicroRNA target predictions in animals [J]. Nat Genet, 2006, 38: S8-13.
[7] Bonnet E, Wuyts J, Rouze P, et al. Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes [J]. Proc Natl Acad Sci USA, 2004, 101(31): 11511-11516.
[8] Sunkar R, Zhu J K. Novel and stress regulated microRNAs and other small RNAs from Arabidopsis [J]. Plant Cell, 2004, 16(8): 2001-2019.
[9] Lytle J R,Yario T A,Steitz J A. Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5’UTR as in the 3’UTR [J].Proc Natl Acad Sci U S A, 2007, 104(23): 9667-9672.
[10] Archak S, Nagaraju J. Computational prediction of rice(Oryza sativa)miRNA targets. genomics [J]. Proteomics & Bioinformatics, 2007, 5(3-4): 196-206.
[11] Palatnik J F, Allen X L, Wu C, et al. Weigel: Control of leaf morphogenesis by microRNAs [J]. Nature, 2003, 425: 257-263.
[12] Kidner C A. The many roles of small RNAs in leaf development [J]. J Genet Genomics, 2010, 37(1):13-21.
[13] Aukerman M J, Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes [J]. Plant Cell, 2003, 15(11):2730-2741.
[14] Guo H S, Xie Q, Fei J F, et al. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development [J]. Plant Cell, 2005, 17(5): 1376-1386.
[15] Schwab R, Palatnik J F, Riester M, et al. Specific effects of microRNAs on the plant transcriptome [J]. Developmental Cell, 2005, 8(4): 517-527.
[16] Chen H, Li Z, Xiong L. A plant microRNA regulates the adaptation of roots to drought stress [J]. FEBS Lett, 2012, 586: 1742-1747.
[17] Subramanian S. MicroRNA regulation of symbiotic nodule development in legumes [J]. MicroRNA in Plant Development and Stress Response, 2012, 15: 177-195.
[18] Chellappan P, Vanitharani R, Fauquet C M. MicroRNA-binding viral protein interferes with Arabidopsis development [J]. Proc Natl Acad Sci USA, 2005, 102(29): 10381-10386.
[19] Válóczi A, Várallyayé, Kauppinen S, et al. Spatio-temporal accumulation of microRNAs is highly coordinated in developing plant tissue [J]. The Plant Journal, 2006, 47(1): 140-151.
[20] Rhoades M W, Reinhart B J, Lim L P, et al. Prediction of plant microRNA targets [J]. Cell, 2002, 110(4): 513-520.
[21] Mallory A C, Bartel D P, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes [J]. The Plant Cell, 2005, 17(5): 1360-1375.
[22] Wang J W, Wang L J, Mao Y B, et al. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis [J]. Plant Cell, 2005, 17(18): 2204-2216.
[23] Li B S, Duan H, Li J G, et al. Global identification of miRNAs and targets in Populus euphratica under salt stress [J]. Plant Mol Biol, 2013, 81(16): 525-539.
[24] Liu P P, Montgomery T A, Fahlgren N, et al. Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages [J]. The Plant Journal, 2007, 52(1):133-146.
[25] Liu X D, Huang J, Wang Y, et al. The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression [J]. The Plant Journal, 2010, 62(3):416-428.
[26] Hendelmen A, Buxdorfk, Stav R, et al. Inhibition of lamina oatgrowth following solanam Lycopersioum AUXIN RESPONSE FACTORIO(SIARF10)derepression[J]. Plant Mol Biol, 2012, 78:261-476.
[27] Meng Y J, Wu P, Chen M. MicroRNAs in plant roots: current understanding and future perspectives [J]. Non Coding RNAs in Plants RNA Technologies, 2011:269-284.
[28] Yin X C, Wang J, Cheng H, et al. Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virus [J]. Planta, 2013, 237(5):1213-1225
[29] Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species [J]. BMC Plant Biology, 2008, 8: 37.
[30] Goetz M, Vivian-Smith A, Johnson S D, et al. AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis[J]. The Plant Cell, 2006, 18(8): 1873-1886.
[31] Goetz M, Hooper L C, Johnson S D, et al. Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato [J]. Plant Physiology, 2007, 145(2): 351-366.
[32] Varaud E, Brioudes F, Szecsi J, et al. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp [J]. The Plant Cell, 2011, 23(3): 973-983.
[33] Nagpal P, Ellis C M, Weber H, et al. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and ower maturation [J]. Development, 2005, 132(18): 4107-411.
[34] Ru P, Xu L, Ma H, et al. Plant fertility defects induced by the enhanced expression of microRNA167 [J]. Cell Research, 2006, 16(5): 457-465.
[35] Wu M F, Tian Q, Reed J W. Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction [J]. Development, 2006, 133(21): 4211-4218.
[36] Yang J H, Han S J, Yoon E K, et al. Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells [J]. Nuclec Acids Res, 2006, 34(6): 1892-1899.
[37] Gutierrez L, Bussell J D, Pacurar D I, et al. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of auxin response factor transcripts and microRNA abundance [J]. Plant Cell, 2009, 21:3119-3132.
[38] Meng Y, Huang F, Shi Q, et al. Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant [J]. Planta, 2009, 230(5): 883-898.
[39] Allen E, Xie Z, Gustafson A M, et al. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants [J]. Cell, 2005, 121(2): 207-221.
[40] Williams L, Carles C C, Osmont K S, et al. A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes [J]. Proc Natl Acad Sci USA, 2005,102(27): 9703-9708.
[41] Garcia D, Collier S A, Byrne M E, et al. Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway [J]. Curr Biol. 2006,16(9): 933-938.
[42] Cho S H, Coruh C, Axtell M J. miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens [J]. The plant cell, 2012, 24(12): 4837-4849.
[43] Marin E, Jouannet V, Herz A, et al. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an auto-regulatory network quantitatively regulating lateral root growth[J]. Plant Cell, 2010, 22(4): 1104-1117.
[44] Yoon E K, Yang J H, Lim J, et al. Auxin regulation of the microRNA390-dependent trans-acting small interfering RNA pathway in Arabidopsis lateral root development[J]. Nucleic Acids Res, 2010, 38(4): 1382-1391.
[45] Wang J, Gao X, Li L, et al. Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice [J]. J Exp Bot, 2010, 61(6): 1885-1895.
[46] Kinoshita N, Wang H, Kasahara H, et al. IAA-Ala resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress [J]. Plant Cell, 2012, 24(9): 3590-3602.

Metrics

Comments

www.nldxb.njfu.edu.cn

Edited ＆ Published by Editorial Department of Nanjing Forestry University(Natural Sciences Edition)
Address： No.159 Longpan Road,Nanjing 210037 Jiangsu,P.R.China
E-mail ：xuebao@njfu.edu.cn , xuebao@njfu.com.cn
Telephone +86-25-85428247,85427076
Distributed by China International Book Trading Corporation P.O. Box 399, Beijing ,P.R. China

Advance on miR160/miR167/miR390 family and its target genes in plants

PDF

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 0

Recommended Articles

Metrics

Comments

Author

Reader

Reviewer