JOURNAL OF NANJING FORESTRY UNIVERSITY ›› 2015, Vol. 39 ›› Issue (05): 45-51.doi: 10.3969/j.issn.1000-2006.2015.05.008
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WANG Deyuan, TONG Chunfa*
Online:
2015-10-15
Published:
2015-10-15
CLC Number:
WANG Deyuan, TONG Chunfa. HalfsibMS: An R package for genetic analysis of half-sib progeny test at multiple sites in forest trees[J]. JOURNAL OF NANJING FORESTRY UNIVERSITY, 2015, 39(05): 45-51.
[1] 王章荣. 林木高世代育种原理及其在我国的应用[J]. 林业科技开发, 2012,26(1):1-5.
Wang Z R. High generation breeding principles of forest tree and its application in our country[J]. China Forestry Science and Technology, 2012,26(1):1-5.
[2] 孔繁浩, 阮梓材. 半同胞子代测定的试验设计和分析[J]. 广东林业科技, 1988(1):32-35. Kong F H, Ruan Z C. The experimental design and analysis of half-sib progeny test[J]. Guangdong Forestry Science and Technology, 1977,4(2):152-158. [3] 福建省洋口林场,南京林产工业学院树木育种组. 杉木优树后代测定及其遗传力的估计[J]. 遗传学报, 1977,4(2):152-158. Yang-kou Forest Station of Fujian, Nanking Forest Products Industrial College. The progeny test of the plus trees of Chinese fir and estimation of its heritability[J]. Acta Genetica Sinica, 1977,4(2):152-158. [4] 王明庥. 林木遗传育种学[M]. 北京: 中国林业出版社, 2001. Wang M X. Forest tree genetics and breeding[M]. Beijing:China Forestry Publishing House, 2001. [5] 李林源. 23年生杉木第2代种子园自由授粉子代测定林分析及选择[J]. 福建林学院学报, 2013,33(4):351-356. Li L Y.Analysis and selection for 23 years old open-pollinated progeny test of the 2nd generation seed orchard in Cunninghamia lanceolata[J]. Journal of Fujian College of Forestry, 2013,33(4):351-356. [6] 白天道, 徐立安, 王章荣, 等. 马尾松实生种子园自由授粉子代测定及亲本家系选择增益估算[J]. 林业科学研究, 2012,25(4):449-455. Bai T D, Xu L A, Wang Z R, et al. Estimation of parents genetic gain by open-pollinated progeny test of seedling seed orchard of Masson Pine[J]. Forest Research, 2012,25(4):449-455. [7] 曹汉洋. 杉木第2代种子园半同胞子代测定及早期选择[J]. 南京林业大学学报:自然科学版, 2011,35(1):19-23. Cao H Y.Half-sib progeny test and early selection of the 2nd generation seed orchard for Cunninghamia lanceolata[J]. Journal of Nanjing Forestry University:Natural Sciences Edition, 2011,35(1):19-23. [8] Tambarussi E V, Sebbenn A M, Moraes M L T, et al. Estimative of genetic parameters in progeny test of Pinus caribaea Morelet var. hondurensis Barret & Golfari by quantitative traits and microsatellite markers[J]. Bragantia, 2010,69(1):39-47. [9] 胡国登. 杉木第二代种子园单亲子代测定及联合选择[J]. 福建林业科技, 2009,36(1):1-6. Hu G D.One-parent progeny test and combined selection of the second generation seed orchard of Cunninghamia lanceolata[J]. Journal of Fujian Forestry Science and Technology, 2009,36(1):1-6. [10] 柯潮榕. 马尾松半同胞子代测定及速生优良家系和个体选择[J]. 福建林业科技, 2008,35(2):25-29. Ke C R,Study on progeny test and selection of fast growing families and individuals in masson pine[J]. Journal of Fujian Forestry Science and Technology, 2008,35(2):25-29. [11] Wells O O, Snyder E B. Notes: longleaf pine half-sib progeny test[J]. Forest Science, 1976,22(4):404-406. [12] 黄少伟, 钟伟华, 陈炳铨. 火炬松半同胞子代配合选择的遗传增益估算[J]. 林业科学, 2006,42(4):33-37. Huang S W, Zhong W H, Chen B Q. Estimation on genetic gains of combined selection for growth traits of half-sib progeny of Pinus taeda[J]. Scientia Silvae Sinicae, 2006,42(4):33-37. [13] 成铁龙, 施季森. 枫香半同胞子代遗传变异研究[J]. 南京林业大学学报:自然科学版, 2005,29(1):29-32. Chen T L, Shi J S.Genetic variation of the half-sib progeny of Liquidambar formosana Hance[J]. Journal of Nanjing Forestry University:Natural Sciences Edition, 2005,29(1):29-32. [14] 江瑞荣. 马尾松优树子代测定及其选择的研究[J]. 福建林学院学报, 2003,23(3):266-269. Jiang R R.The genetic testing and selection research on masson pine dominant trees[J]. Journal of Fujian College of Forestry, 2003,23(3):266-269. [15] 黄少伟, 钟伟华, 黄凯, 等. 火炬松自由授粉子代多地点试验[J]. 林业科学研究, 2001,14(5):509-514. Huang S W, Zhong W H, Huang K, et al. Progeny test for the open-pollinated families of loblolly pine with multiple site[J]. Forest Research, 2001,14(5):509-514. [16] 王国义, 张淑华, 宁依萍, 等. 红松优树子代多点测定综合分析[J]. 东北林业大学学报, 2000,28(3):51-53. Wang G Y, Zhang S H, Ning Y P, et al. Synthetic analysis on multi-site determination of filial generation for Korean pine elite tree[J]. Journal of Northeast Forestry University, 2000,28(3):51-53. [17] 王行轩, 张安, 王伟. 红松优树半同胞多点子代测定综合分析[J]. 辽宁林业科技, 1988(3):9-11. Wang X X, Zhang A, Wang W.Synthetic analysis on half-sib progeny test of Korean pine elite tree with multi-site[J]. Liaoning Forestry Science and Technology, 1988(3):9-11. [18] 童春发, 卫巍, 尹辉, 等. 林木半同胞子代测定遗传模型分析[J]. 林业科学, 2010,46(1):29-35. Tong C F, Wei W, Yin H, et al. Analysis of genetic model for half-sib progeny test in forest trees[J]. Scientia Silvae Sinicae, 2010,46(1):29-35. [19] Wright J W. Introduction to forest genetics[M]. New York: Academic Press, 1976. [20] 朱之悌. 林木遗传学基础[M]. 北京: 中国林业出版社, 1990. Zhu Z T. Essentials of forest tree genetics[M]. Beijing: China Forestry Publishing House, 1990. [21] 沈熙环, 陈晓阳. 林木育种学[M]. 北京: 高等教育出版社, 2005. Shen X H, Chen X Y. Forest tree breeding[M]. Beijing: Higher Education Press, 2005. [22] 续九如. 林木数量遗传学[M]. 北京: 高等教育出版社, 2006. Xu J R. Forest treequantitative genetics[M]. Beijing: Higher Education Press, 2006. [23] 怀特 T L, 亚当斯 W T, 尼尔 D B. 森林遗传学[M]. 李火根, 崔建国, 译. 北京: 科学出版社, 2013. White T L, Adams W T, Neale D B. Forest genetics[M]. Li H G, Cui J G, Trans. Beijing: Science Press, 2013. [24] 叶培忠, 陈岳武, 陈瑾, 等. 杉木遗传型×环境互作和遗传稳定性的研究——Ⅱ.杉木多点子代测定的分析[J]. 南京林业大学学报, 1980,4(4):23-34. Ye P Z, Chen Y W, Chen J, et al. Study on genotype×environment interaction and genotypic stability in Chinese fir—Ⅱ. Analysis on half-sib progeny test of Chinese fir with multi-site[J]. Journal of Nanjing Forestry University, 1980,4(4):23-34. [25] 李兴业, 王福森, 王奉吉, 等. 樟子松优树子代遗传×环境互作效应及生态稳定性分析[J]. 防护林科技, 2000(3):62-65. Li X Y, Wang F S, Wang F J, et al. Interaction effect between heredity and environment and analysis of ecological stability of superior tree progeny of P.sylvestris var.mongolica[J]. Protection Forest Science and Technology, 2000(3):62-65. [26] 郑仁华, 傅玉狮, 肖晖, 等. 马尾松优树子代基因型与环境互作及稳定性的研究[J]. 福建林业科技, 1999(S1):40-44. Zheng R H, Fu Y S, Xiao H, et al. Study on genotype×environment interaction and stability in Masson pine[J]. Journal of Fujian Forestry Science and Technology, 1999(S1):40-44. [27] Bian L, Shi J, Zheng R, et al. Genetic parameters and genotype-environment interactions of Chinese fir(Cunninghamia lanceolata)in Fujian Province [J]. Canadian Journal of Forest Research, 2014,44(6):582-592. [28] Rao C R, Toutenburg H, Shalabh H, et al. Linear models and generalizations: Least squares and alternatives[M]. New York: Springer, 2008. [29] 王松桂, 史建红, 尹素菊, 等. 线性模型引论[M]. 北京: 科学出版社, 2007. Wang S G, Shi J H, Yin S J, et al. Linear model introduction[M]. Beijing: Science Press, 2007. [30] 顾万春. 统计遗传学[M]. 北京: 科学出版社, 2004. Gu W C. Statistical genetics[M]. Beijing: Science Press, 2004. [31] 辛娜娜, 张蕊, 范辉华, 等. 5年生木荷生长和形质性状的家系变异和选择[J]. 林业科学研究, 2014,27(3):316-322. Xin N N, Zhang R, Fan H H, et al. Family variation and selection of growth and quality characteristics of 5-year-old Schima superba seedlings[J]. Forest Research. 2014, 27(3):316-322. [32] 童春发, 杨立伟, 蒋安纳, 等. 不平衡巢式设计遗传模型分析[J]. 林业科学, 2013,49(3):1-8. Tong C F, Yang L W, Jiang A N, et al. Analyses of genetic models for unbalanced nested design[J]. Scientia Silvae Sinicae, 2013,49(3):1-8. [33] Tong C F, Liu G X, Yang L W, et al. GSCA: new software and algorithms to analysis Diallel mating designs based on restricted linear model[J]. Silvae Genetica, 2012,61(3):126-132. [34] Henderson C R. Estimation of variance and covariance components[J]. Biometrics, 1953,9(2):226-252. [35] Ofversten J. Exact tests for variance components in unbalanced mixed linear models[J]. Biometrics, 1993,49(1):45-57. [36] Gilmour A R, Gogel B J, Cullis B R, et al. ASReml User Guide Release 3.0[M]. Hemel Hempstead,UK: VSN International Ltd., 2009. [37] 林元震, 陈晓阳. R与ASReml-R统计分析教程[M]. 北京: 中国林业出版社, 2014. Lin Y Z, Chen X Y. R & ASReml-R statistical analysis tutorial[M]. Beijing:China Forestry Publishing House, 2014. |
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